Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs200477098 chr17:30310465 AT/A 9.55E-12 285 26.6 23.4 10.37 KM Plot
KIRP rs200789785 chr10:43208092 TATAG/T 6.87E-5 289 25.57 27.47 11.43 KM Plot
KIRP rs200884432 chr13:47028925 CTTG/C 5.13E-7 287 24.8 30.9 23.23 KM Plot
KIRP rs200939538 chr3:154049943 AAAAAAAAG/A 7.8E-5 286 26.07 24.82 18.2 KM Plot
KIRP rs201084982 chr10:43519055 G/GAT 4.3E-5 289 25.67 25.95 11.43 KM Plot
KIRP rs2011357 chr1:231480208 A/G 0.000119 284 21.28 26.07 25.37 KM Plot
KIRP rs2011383 chr1:231479788 T/A 0.00013 283 21.28 25.63 26.18 KM Plot
KIRP rs201223481 chr12:49862246 TTTTTTGTTTTTG/T 4.13E-6 286 25.53 39.53 10.97 KM Plot
KIRP rs201232664 chr21:44268595 TCA/T 0.000161 285 25.53 40.7 13.07 KM Plot
KIRP rs201361434 chr10:43130865 TG/T 7.76E-5 286 25.4 27.47 11.43 KM Plot
KIRP rs201368738 chr6:110797408 GCCA/G 4.3E-6 281 18.57 22.57 26.52 KM Plot
KIRP rs2013813 chr19:19117595 T/C 6.23E-5 288 25.78 27.75 25.37 KM Plot
KIRP rs201414850 chr6:26235786 TAA/TA 1.43E-9 284 25.6 26.4 9 KM Plot
KIRP rs201707806 chr11:102724515 T/A 8.84E-6 287 25.7 26.83 10.97 KM Plot
KIRP rs201808116 chr11:47058943 A/T 4.0E-10 285 25.23 29.8 10.6 KM Plot